Maizesnp50 beadchip

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Web28 dec. 2011 · SNP genotyping was performed using the MaizeSNP50 BeadChip produced by Emei Tongde (Beijing). The SNP content featured on this chip, using 56,110 evenly spaced markers to cover the whole maize genome based on the B73 reference sequence, was selected from several public and private sources with 984 negative controls. WebThe 800K BovineHD BeadChip is the most comprehensive genome wide genotyping array available for all cattle. Species: Bovine. $100.00 each. View. ... The MaizeSNP50 BeadChip contains more than 50,000 validated markers derived from the B73 reference sequence and was subjected to rigorous functional testing across over 30 diverse maize lines to ensur.

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Web27 okt. 2024 · Table 1 Phenotypic variance in KRN for 639 maize inbred lines in three environments Full size table QTNs for KRN identified by different methods Single-locus … Web31 aug. 2016 · A total of 56,110 SNPs on the MaizeSNP50 BeadChip were used for genotyping the panel. Detailed information for this chip can be downloaded from the … compatibility\u0027s 1b

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Web10 jan. 2024 · In this study, 226 accessions derived from the Suwan population and temperate resources were selected and genotyped by using the MaizeSNP50 … WebMaizeSNP50 BeadChip, which consists of 50 k usable SNPs (Ganal et al. 2011), has been used extensively for genetic studies, such as QTL mapping and GWAS (Li et al. 2013; Wang et al. 2015; Chen et al. 2016). In the our previous study (Sa et al. 2015), we constructed a linkage map and detected QTLs between agronomic traits and Web29 sep. 2014 · Among these are 116,224 variants in coding regions and 45,655 SNPs of the Illumina® MaizeSNP50 BeadChip for study comparison. In a subset of 45,974 variants, … ebert clinic frisco

Maizesnp50 beadchip

Web16 feb. 2024 · Compared with the widely-used Illumina® MaizeSNP50 BeadChip, our 55 K array has lower missing and heterozygous rates and more SNPs with lower minor allele … Webnotyped by using the MaizeSNP50 BeadChip, including approximately 56,110 single nucleotide polymorphism (SNP) markers. The objectives were to evaluate the gen-etic …

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WebMaizeSNP50 BeadChip Documentation Kit Documents SIZE DATE Infinium HD Assay Ultra Protocol Guide (11328087) Instructions for performing the Infinium HD Ultra assay. View … Web8 dec. 2011 · SNP genotyping arrays have been useful for many applications that require a large number of molecular markers such as high-density genetic mapping, genome-wide …

Webdetermined by the MaizeSNP50 BeadChip. Among the 1 026244 SNPs, 931484 (90.8%) were mapped to within the 23106 genes (filtered-gene set, release 5b). On average, … WebMaizeSNP50 BeadChip (llumina Inﬁnium 50K) [70] Subset of MaizeSNP50 (Illumina Inﬁnium 3K) [71] Axiom 600K [72] Axiom 55K [73] MaizeSNPDB [74] 36 207 Genes [75] ... Custom Genotyping BeadChip [ 94] 50K Illumina In ﬁnium iSelect [95] BarleyVarDB [96] 21 439 Genes [97] 20 Accessions [98] Sorghum (Sorghum

WebCompared with the widely-used Illumina® MaizeSNP50 BeadChip, our 55 K array has lower missing and heterozygous rates and more SNPs with lower minor allele frequency (MAF) … WebThe MaizeSNP50 DNA Analysis Kit enables the interrogation of genetic variation across maize lines. Illumina developed this BeadChip array in collaboration with TraitGenetics, the French National Institute for Agricultural Research (INRA), and Syngenta, with the SNP content selected from several public and private sources.

Web1 aug. 2013 · The MLMM method consistently resolved this complex region into three independent association signals represented by one MaizeSNP50 BeadChip SNP and two GBS SNPs, all located within ZmVTE4. Although not as extensive, Li et al. (2012) identified six additional SNPs within a 2.4-Mb region surrounding ZmVTE4 that were also …

Web19 nov. 2015 · The MaizeLD BeadChip has focused the content from the MaizeSNP50 BeadChip to serve as an effective base array with utility across a broad range of maize varieties. Many breeding programs will take advantage of the product’s flexibility to add custom content, complementing the base array for their specific varietal and … ebert clock repairWeb8 aug. 2016 · MODEM was developed to provide standardized data that can easily be retrieved and visualized, to better serve researchers. . . ∼50K SNPs from MaizeSNP50 … compatibility\u0027s 1dWebAbstract To investigate the genetic structure of Chinese maize germplasm, the MaizeSNP50 BeadChip with 56,110 single nucleotide polymorphisms (SNPs) was used to genotype a collection of 367 inbred lines widely used in maize breeding of China. compatibility\u0027s 1aWebMaizeSNP50 BeadChip (Ganal et al., 2011), a subset of 368 lines was genotyped by deep RNA-seq (Fu et al., 2013), 469 lines by GBS, and 153 lines by 600K array (Figure 1). High consistency between different genotyping methods was observed, at least 96.1%, with an overall average of 97.4% ebert cornelia halleWeb11 sep. 2014 · In this study, 513 diverse maize inbred lines [13], representing tropical/subtropical and temperate germplasm, were genotyped by MaizeSNP50 BeadChip containing 56,110 SNPs [14]. ebert corporationWebAbstract To investigate the genetic structure of Chinese maize germplasm, the MaizeSNP50 BeadChip with 56,110 single nucleotide polymorphisms (SNPs) was used to genotype a … ebert city slickersWeb17 dec. 2013 · Both the MaizeSNP50 BeadChip and the Sequenom MassArray iPLEX platforms confirm a subset of high-quality SNPs. Of these SNPs, we have mapped … compatibility\u0027s 1l